BioPortale
This web server
| We aim to give access to tools and databases through the BioPortale,
with simple but efficient interfaces. As described before, our main
services currently provide access to sequence analysis tools. We are
developing Web intefaces for databases, and hope to have these soon in
production. We create this BioPortale to offer access to various analysis tools. The different domains are represented by the tabs on the top of this web page. |
Many tools are installed on our computers, much more than
those represented on these web pages. In addition to the BioPortale, we have set up an anonymous FTP server, in which we mirror all the EBI databases, part of the NCBI databases, expasy databases, Ensembl as well as other databases that have been asked by our researchers. |
Developments
Our main current development involves the web server: the BioPortale. We are developing it using Zope and Plone (more)All our program interfaces are developed as Zope or Plone products. Once they will be stable we will provide the source code in our FTP server.
Our current products include:
| Tool | description | product |
|---|---|---|
Bioinfo tools |
||
| Blast Workflow | blast + clustalw + mview + various visualisation utilities | plone |
| Fasta Workflow | fasta + clustalw + mview + various visualisation utilities | zope |
| clustalw | with visualisation utilities | zope |
| muscle | with visualisation utilities | zope |
| T-coffee | tcoffee, mcoffee, expresso, combined |
plone |
| water-needle | waterman-needle from Emboss |
zope |
Databases |
||
| POGO |
acces to GO and PO |
zope |
| LaPsuS |
access to PubMed |
zope |