T-Coffee allows you to combine results obtained with several alignment methods. For instance if you have an alignment coming from ClustalW, an other alignment coming from Dialign, and a structural alignment of some of your sequences, T-Coffee will combine all that information and produce a new multiple sequence alignment having the best agreement with all these methods (see the FAQ for more details)

Please be careful to:

Limitations: Maximum number of sequences is 80
Limitations: Maximum length of sequences is 2000

Installed Combine

We have currently installed version 5.0.3 of the T_coffee.

The official T_coffee web page is available at this link.

Combine form

Output

• You can choose the case and the look of results:

Case	upper	upper case for residues
	lower	lower case for residues
Residue Number	ON	print residue number
	OFF
Order	input	output order based on sequences input order
	aligned	output order based on alignment

• Check the inputs number to choose the number of multiple alignment sequences in input
  

T_coffee Tutorials and Technical Notes

Please refer, to the T_coffee home page.
T_coffee Tutorial (HTML) and T_coffee Techmical Notes (HTML)